Package: BioVizSeq 1.0.8

BioVizSeq: Visualizing the Elements Within Bio-Sequences

Visualizing the types and distribution of elements within bio-sequences. At the same time, We have developed a geom layer, geom_rrect(), that can generate rounded rectangles. No external references are used in the development of this package.

Authors:Shiqi Zhao [aut, cre, cph]

BioVizSeq_1.0.8.tar.gz
BioVizSeq_1.0.8.zip(r-4.7)BioVizSeq_1.0.8.zip(r-4.6)BioVizSeq_1.0.8.zip(r-4.5)
BioVizSeq_1.0.8.tgz(r-4.6-any)BioVizSeq_1.0.8.tgz(r-4.5-any)
BioVizSeq_1.0.8.tar.gz(r-4.7-any)BioVizSeq_1.0.8.tar.gz(r-4.6-any)
BioVizSeq_1.0.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BioVizSeq/json (API)
NEWS

# Install 'BioVizSeq' in R:

install.packages('BioVizSeq', repos = c('https://zhaosq2022.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zhaosq2022/biovizseq/issues

On CRAN:

3.70 score 1 stars 25 scripts 325 downloads 28 exports 92 dependencies

Last updated from:459024b98d. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	173
source / vignettes	OK	224
linux-release-x86_64	OK	168
macos-release-arm64	OK	170
macos-oldrel-arm64	OK	271
windows-devel	OK	135
windows-release	OK	118
windows-oldrel	OK	120
wasm-release	OK	125

Exports:biovizseq cdd_plot cdd_to_loc combi_p combi_p2 fastaleng geom_rrect gff_plot gff_statistics gff_to_loc meme_plot meme_seq meme_to_loc motif_plot pfam_plot pfam_to_loc plantcare_classify plantcare_plot plantcare_plot1 plantcare_plot2 plantcare_plot3 plantcare_statistic1 plantcare_statistic2 plantcare_to_loc ProtParam_calc smart_plot smart_to_loc upload_fa_to_plantcare

Dependencies:ade4 ape aplot askpass base64enc bslib cachem cli commonmark cpp11 curl digest dplyr evaluate farver fastmap fontawesome fontBitstreamVera fontLiberation fontquiver fs gdtools generics ggfun ggh4x ggiraph ggplot2 ggplotify ggtree glue gridGraphics gtable highr htmltools htmlwidgets httpuv httr isoband jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle magrittr MASS memoise mime nlme openssl otel patchwork pillar pixmap pkgconfig promises purrr R6 rappdirs RColorBrewer Rcpp RcppArmadillo rlang rmarkdown S7 sass scales segmented seqinr shiny sourcetools sp stringi stringr sys systemfonts tibble tidyr tidyselect tidytree tinytex treeio utf8 vctrs viridisLite withr xfun xtable yaml yulab.utils

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
BioVizSeq shiny app start function.	biovizseq
cdd_plot	cdd_plot
cdd_to_loc	cdd_to_loc
combi_p	combi_p
combi_p2	combi_p2
fastaleng	fastaleng
geom_rrect	geom_rrect
gff_plot	gff_plot
gff_statistics	gff_statistics
gff_to_loc	gff_to_loc
meme_plot	meme_plot
meme_seq	meme_seq
meme_to_loc	meme_to_loc
motif_plot	motif_plot
pfam_plot	pfam_plot
pfam_to_loc	pfam_to_loc
plantcare_classify	plantcare_classify
plantcare_plot	plantcare_plot
plantcare_plot1	plantcare_plot1
plantcare_plot2	plantcare_plot2
plantcare_plot3	plantcare_plot3
plantcare_statistic1	plantcare_statistic1
plantcare_statistic2	plantcare_statistic2
plantcare_to_loc	plantcare_to_loc
ProtParam_calc	ProtParam_calc
smart_plot	smart_plot
smart_to_loc	smart_to_loc
upload_fa_to_plantcare	upload_fa_to_plantcare