Package: BioVizSeq 1.0.2
BioVizSeq: Visualizing the Elements Within Bio-Sequences
Visualizing the types and distribution of elements within bio-sequences. At the same time, We have developed a geom layer, geom_rrect(), that can generate rounded rectangles. No external references are used in the development of this package.
Authors:
BioVizSeq_1.0.2.tar.gz
BioVizSeq_1.0.2.zip(r-4.5)BioVizSeq_1.0.2.zip(r-4.4)BioVizSeq_1.0.2.zip(r-4.3)
BioVizSeq_1.0.2.tgz(r-4.5-any)BioVizSeq_1.0.2.tgz(r-4.4-any)BioVizSeq_1.0.2.tgz(r-4.3-any)
BioVizSeq_1.0.2.tar.gz(r-4.5-noble)BioVizSeq_1.0.2.tar.gz(r-4.4-noble)
BioVizSeq_1.0.2.tgz(r-4.4-emscripten)BioVizSeq_1.0.2.tgz(r-4.3-emscripten)
BioVizSeq.pdf |BioVizSeq.html✨
BioVizSeq/json (API)
NEWS
| # Install 'BioVizSeq' in R: |
| install.packages('BioVizSeq', repos = c('https://zhaosq2022.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/zhaosq2022/biovizseq/issues
Last updated 3 months agofrom:09831fb586. Checks:1 OK, 8 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 18 2025 |
| R-4.5-win | NOTE | Mar 18 2025 |
| R-4.5-mac | NOTE | Mar 18 2025 |
| R-4.5-linux | NOTE | Feb 16 2025 |
| R-4.4-win | NOTE | Mar 18 2025 |
| R-4.4-mac | NOTE | Mar 18 2025 |
| R-4.4-linux | NOTE | Mar 18 2025 |
| R-4.3-win | NOTE | Mar 18 2025 |
| R-4.3-mac | NOTE | Mar 18 2025 |
Exports:biovizseqcdd_plotcdd_to_loccombi_pfastalenggeom_rrectgff_plotgff_to_locmeme_plotmeme_seqmeme_to_locmotif_plotpfam_plotpfam_to_locplantcare_classifyplantcare_plotplantcare_statistic1plantcare_statistic2plantcare_to_locsmart_plotsmart_to_locupload_fa_to_plantcare
Dependencies:ade4apeaplotaskpassbase64encbslibcachemclicolorspacecommonmarkcpp11crayoncurldigestdplyrfansifarverfastmapfontawesomefsgenericsggfunggplot2ggplotifyggtreegluegridGraphicsgtablehtmltoolshttpuvhttrisobandjquerylibjsonlitelabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpatchworkpillarpixmappkgconfigpromisespurrrR6rappdirsRColorBrewerRcppRcppArmadillorlangsassscalessegmentedseqinrshinysourcetoolsspstringistringrsystibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithrxtableyulab.utils
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BioVizSeq shiny app start function. | biovizseq |
| cdd_plot | cdd_plot |
| cdd_to_loc | cdd_to_loc |
| combi_p | combi_p |
| fastaleng | fastaleng |
| geom_rrect | geom_rrect |
| gff_plot | gff_plot |
| gff_to_loc | gff_to_loc |
| meme_plot | meme_plot |
| meme_seq | meme_seq |
| meme_to_loc | meme_to_loc |
| motif_plot | motif_plot |
| pfam_plot | pfam_plot |
| pfam_to_loc | pfam_to_loc |
| plantcare_classify | plantcare_classify |
| plantcare_plot | plantcare_plot |
| plantcare_statistic1 | plantcare_statistic1 |
| plantcare_statistic2 | plantcare_statistic2 |
| plantcare_to_loc | plantcare_to_loc |
| smart_plot | smart_plot |
| smart_to_loc | smart_to_loc |
| upload_fa_to_plantcare | upload_fa_to_plantcare |
