Package: BioVizSeq 0.1.1

BioVizSeq: Visualizing the Elements Within Bio-Sequences

Visualizing the types and distribution of elements within bio-sequences. At the same time, We have developed a geom layer, geom_rrect(), that can generate rounded rectangles. No external references are used in the development of this package.

Authors:Shiqi Zhao [aut, cre, cph]

BioVizSeq_0.1.1.tar.gz
BioVizSeq_0.1.1.zip(r-4.5)BioVizSeq_0.1.1.zip(r-4.4)BioVizSeq_0.1.1.zip(r-4.3)
BioVizSeq_0.1.1.tgz(r-4.4-any)BioVizSeq_0.1.1.tgz(r-4.3-any)
BioVizSeq_0.1.1.tar.gz(r-4.5-noble)BioVizSeq_0.1.1.tar.gz(r-4.4-noble)
BioVizSeq_0.1.1.tgz(r-4.4-emscripten)BioVizSeq_0.1.1.tgz(r-4.3-emscripten)
BioVizSeq.pdf |BioVizSeq.html✨
BioVizSeq/json (API)

# Install 'BioVizSeq' in R:

install.packages('BioVizSeq', repos = c('https://zhaosq2022.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zhaosq2022/biovizseq/issues

On CRAN:

2.00 score 23 downloads 20 exports 50 dependencies

Last updated 1 days agofrom:6973683592. Checks:OK: 1 NOTE: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 23 2024
R-4.5-win	NOTE	Nov 23 2024
R-4.5-linux	NOTE	Nov 23 2024
R-4.4-win	NOTE	Nov 23 2024
R-4.4-mac	NOTE	Nov 23 2024
R-4.3-win	NOTE	Nov 23 2024
R-4.3-mac	NOTE	Nov 23 2024

Exports:cdd_plot cdd_to_loc fastaleng geom_rrect get_motif_location gff_plot gff_to_loc meme_plot motif_plot motif_seq pfam_plot pfam_to_loc plantcare_classify plantcare_plot plantcare_statistic1 plantcare_statistic2 plantcare_to_loc smart_plot smart_to_loc upload_fa_to_plantcare

Dependencies:ade4 askpass cli colorspace cpp11 curl dplyr fansi farver generics ggplot2 glue gtable httr isoband jsonlite labeling lattice lifecycle magrittr MASS Matrix mgcv mime munsell nlme openssl pillar pixmap pkgconfig purrr R6 RColorBrewer Rcpp RcppArmadillo rlang scales segmented seqinr sp stringi stringr sys tibble tidyr tidyselect utf8 vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
cdd_plot	cdd_plot
cdd_to_loc	cdd_to_loc
fastaleng	fastaleng
geom_rrect	geom_rrect
get_motif_location	get_motif_location
gff_plot	gff_plot
gff_to_loc	gff_to_loc
meme_plot	meme_plot
motif_plot	motif_plot
motif_seq	motif_seq
pfam_plot	pfam_plot
pfam_to_loc	pfam_to_loc
plantcare_classify	plantcare_classify
plantcare_plot	plantcare_plot
plantcare_statistic1	plantcare_statistic1
plantcare_statistic2	plantcare_statistic2
plantcare_to_loc	plantcare_to_loc
smart_plot	smart_plot
smart_to_loc	smart_to_loc
upload_fa_to_plantcare	upload_fa_to_plantcare