{
  "_id": "6aaf96ac3d719c1f8407f5ef",
  "Package": "BioVizSeq",
  "Type": "Package",
  "Title": "Visualizing the Elements Within Bio-Sequences",
  "Version": "1.0.8",
  "Authors@R": "person(\"Shiqi\", \"Zhao\", , \"zhaosq89@163.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-2360-956X\"))",
  "Maintainer": "Shiqi Zhao <zhaosq89@163.com>",
  "Description": "Visualizing the types and distribution of elements within\nbio-sequences. At the same time, We have developed a geom\nlayer, geom_rrect(), that can generate rounded rectangles. No\nexternal references are used in the development of this\npackage.",
  "Encoding": "UTF-8",
  "License": "Artistic-2.0",
  "Language": "en-US",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev make libicu-dev libpng-dev libuv1-dev\nlibssl-dev zlib1g-dev",
  "Repository": "https://zhaosq2022.r-universe.dev",
  "Date/Publication": "2026-04-23 15:32:04 UTC",
  "RemoteUrl": "https://github.com/zhaosq2022/biovizseq",
  "RemoteRef": "HEAD",
  "RemoteSha": "459024b98df3f747329bbf23497e617b8a0f9153",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-20 08:14:02 UTC",
    "User": "root"
  },
  "Author": "Shiqi Zhao [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0002-2360-956X>)",
  "_user": "zhaosq2022",
  "_type": "src",
  "_file": "BioVizSeq_1.0.8.tar.gz",
  "_fileid": "https://r2.ropensci.org/b1b247e841be81036843d1dda2462884a566710e7ba8107e5416c96eacdc2ee7",
  "_filesize": 1934641,
  "_sha256": "b1b247e841be81036843d1dda2462884a566710e7ba8107e5416c96eacdc2ee7",
  "_expires": "2026-12-29T08:17:46.000Z",
  "_created": "2026-09-20T08:14:02.000Z",
  "_published": "2026-09-20T08:17:48.616Z",
  "_jobs": [
    {
      "job": 106047273760,
      "time": 170,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10601519278"
    },
    {
      "job": 106047273753,
      "time": 178,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10601464374"
    },
    {
      "job": 106047273805,
      "time": 164,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10601339669"
    },
    {
      "job": 106047273761,
      "time": 152,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10601738757"
    },
    {
      "job": 106046864410,
      "time": 194,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10600713569"
    },
    {
      "job": 106047273780,
      "time": 143,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10601099874"
    },
    {
      "job": 106047273692,
      "time": 114,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10600918432"
    },
    {
      "job": 106047273709,
      "time": 109,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10601738731"
    },
    {
      "job": 106047273795,
      "time": 120,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10600638999"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/35498848661",
  "_status": "success",
  "_upstream": "https://github.com/zhaosq2022/biovizseq",
  "_commit": {
    "id": "459024b98df3f747329bbf23497e617b8a0f9153",
    "author": "zhaosq2022 <zhaosq89@163.com>",
    "committer": "zhaosq2022 <zhaosq89@163.com>",
    "message": "gene information\n",
    "time": 1776958324
  },
  "_maintainer": {
    "name": "Shiqi Zhao",
    "email": "zhaosq89@163.com",
    "login": "zhaosq2022",
    "description": "",
    "uuid": 23204985,
    "orcid": "0000-0002-2360-956X"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "RColorBrewer",
      "role": "Imports"
    },
    {
      "package": "seqinr",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "ggtree",
      "role": "Imports"
    },
    {
      "package": "treeio",
      "role": "Imports"
    },
    {
      "package": "ggh4x",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    }
  ],
  "_owner": "zhaosq2022",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-02",
      "n": 1
    },
    {
      "week": "2026-05",
      "n": 1
    },
    {
      "week": "2026-10",
      "n": 1
    },
    {
      "week": "2026-17",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "zhaosq2022",
      "count": 132,
      "uuid": 23204985
    }
  ],
  "_userbio": {
    "uuid": 23204985,
    "type": "user",
    "name": "zhaosq2022",
    "followers": 4
  },
  "_downloads": {
    "count": 343,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BioVizSeq"
  },
  "_devurl": "https://github.com/zhaosq2022/biovizseq",
  "_searchresults": 25,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/BioVizSeq.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/zhaosq2022/biovizseq",
  "_realowner": "zhaosq2022",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2024-11-20"
    },
    {
      "version": "0.1.1",
      "date": "2024-11-27"
    },
    {
      "version": "0.1.2",
      "date": "2024-12-10"
    },
    {
      "version": "1.0.0",
      "date": "2024-12-22"
    },
    {
      "version": "1.0.1",
      "date": "2025-01-11"
    },
    {
      "version": "1.0.2",
      "date": "2025-03-22"
    },
    {
      "version": "1.0.3",
      "date": "2025-04-11"
    },
    {
      "version": "1.0.4",
      "date": "2025-08-22"
    },
    {
      "version": "1.0.5",
      "date": "2026-01-10"
    }
  ],
  "_exports": [
    "biovizseq",
    "cdd_plot",
    "cdd_to_loc",
    "combi_p",
    "combi_p2",
    "fastaleng",
    "geom_rrect",
    "gff_plot",
    "gff_statistics",
    "gff_to_loc",
    "meme_plot",
    "meme_seq",
    "meme_to_loc",
    "motif_plot",
    "pfam_plot",
    "pfam_to_loc",
    "plantcare_classify",
    "plantcare_plot",
    "plantcare_plot1",
    "plantcare_plot2",
    "plantcare_plot3",
    "plantcare_statistic1",
    "plantcare_statistic2",
    "plantcare_to_loc",
    "ProtParam_calc",
    "smart_plot",
    "smart_to_loc",
    "upload_fa_to_plantcare"
  ],
  "_help": [
    {
      "page": "biovizseq",
      "title": "BioVizSeq shiny app start function.",
      "topics": [
        "biovizseq"
      ]
    },
    {
      "page": "cdd_plot",
      "title": "cdd_plot",
      "topics": [
        "cdd_plot"
      ]
    },
    {
      "page": "cdd_to_loc",
      "title": "cdd_to_loc",
      "topics": [
        "cdd_to_loc"
      ]
    },
    {
      "page": "combi_p",
      "title": "combi_p",
      "topics": [
        "combi_p"
      ]
    },
    {
      "page": "combi_p2",
      "title": "combi_p2",
      "topics": [
        "combi_p2"
      ]
    },
    {
      "page": "fastaleng",
      "title": "fastaleng",
      "topics": [
        "fastaleng"
      ]
    },
    {
      "page": "geom_rrect",
      "title": "geom_rrect",
      "topics": [
        "geom_rrect"
      ]
    },
    {
      "page": "gff_plot",
      "title": "gff_plot",
      "topics": [
        "gff_plot"
      ]
    },
    {
      "page": "gff_statistics",
      "title": "gff_statistics",
      "topics": [
        "gff_statistics"
      ]
    },
    {
      "page": "gff_to_loc",
      "title": "gff_to_loc",
      "topics": [
        "gff_to_loc"
      ]
    },
    {
      "page": "meme_plot",
      "title": "meme_plot",
      "topics": [
        "meme_plot"
      ]
    },
    {
      "page": "meme_seq",
      "title": "meme_seq",
      "topics": [
        "meme_seq"
      ]
    },
    {
      "page": "meme_to_loc",
      "title": "meme_to_loc",
      "topics": [
        "meme_to_loc"
      ]
    },
    {
      "page": "motif_plot",
      "title": "motif_plot",
      "topics": [
        "motif_plot"
      ]
    },
    {
      "page": "pfam_plot",
      "title": "pfam_plot",
      "topics": [
        "pfam_plot"
      ]
    },
    {
      "page": "pfam_to_loc",
      "title": "pfam_to_loc",
      "topics": [
        "pfam_to_loc"
      ]
    },
    {
      "page": "plantcare_classify",
      "title": "plantcare_classify",
      "topics": [
        "plantcare_classify"
      ]
    },
    {
      "page": "plantcare_plot",
      "title": "plantcare_plot",
      "topics": [
        "plantcare_plot"
      ]
    },
    {
      "page": "plantcare_plot1",
      "title": "plantcare_plot1",
      "topics": [
        "plantcare_plot1"
      ]
    },
    {
      "page": "plantcare_plot2",
      "title": "plantcare_plot2",
      "topics": [
        "plantcare_plot2"
      ]
    },
    {
      "page": "plantcare_plot3",
      "title": "plantcare_plot3",
      "topics": [
        "plantcare_plot3"
      ]
    },
    {
      "page": "plantcare_statistic1",
      "title": "plantcare_statistic1",
      "topics": [
        "plantcare_statistic1"
      ]
    },
    {
      "page": "plantcare_statistic2",
      "title": "plantcare_statistic2",
      "topics": [
        "plantcare_statistic2"
      ]
    },
    {
      "page": "plantcare_to_loc",
      "title": "plantcare_to_loc",
      "topics": [
        "plantcare_to_loc"
      ]
    },
    {
      "page": "ProtParam_calc",
      "title": "ProtParam_calc",
      "topics": [
        "ProtParam_calc"
      ]
    },
    {
      "page": "smart_plot",
      "title": "smart_plot",
      "topics": [
        "smart_plot"
      ]
    },
    {
      "page": "smart_to_loc",
      "title": "smart_to_loc",
      "topics": [
        "smart_to_loc"
      ]
    },
    {
      "page": "upload_fa_to_plantcare",
      "title": "upload_fa_to_plantcare",
      "topics": [
        "upload_fa_to_plantcare"
      ]
    }
  ],
  "_readme": "https://github.com/zhaosq2022/biovizseq/raw/HEAD/README.md",
  "_rundeps": [
    "ade4",
    "ape",
    "aplot",
    "askpass",
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "commonmark",
    "cpp11",
    "curl",
    "digest",
    "dplyr",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "fontBitstreamVera",
    "fontLiberation",
    "fontquiver",
    "fs",
    "gdtools",
    "generics",
    "ggfun",
    "ggh4x",
    "ggiraph",
    "ggplot2",
    "ggplotify",
    "ggtree",
    "glue",
    "gridGraphics",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr",
    "isoband",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "MASS",
    "memoise",
    "mime",
    "nlme",
    "openssl",
    "otel",
    "patchwork",
    "pillar",
    "pixmap",
    "pkgconfig",
    "promises",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "rlang",
    "rmarkdown",
    "S7",
    "sass",
    "scales",
    "segmented",
    "seqinr",
    "shiny",
    "sourcetools",
    "sp",
    "stringi",
    "stringr",
    "sys",
    "systemfonts",
    "tibble",
    "tidyr",
    "tidyselect",
    "tidytree",
    "tinytex",
    "treeio",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xtable",
    "yaml",
    "yulab.utils"
  ],
  "_score": 3.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "biovizseq",
  "_universes": [
    "zhaosq2022"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.8",
      "date": "2026-09-20T08:16:34.000Z",
      "distro": "resolute",
      "commit": "459024b98df3f747329bbf23497e617b8a0f9153",
      "fileid": "https://r2.ropensci.org/75729c7bb82a52ff7f6e3f38b7e6c662203b58be5283ba3103ade176a486a3ab",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/35498848661"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.8",
      "date": "2026-09-20T08:16:38.000Z",
      "distro": "resolute",
      "commit": "459024b98df3f747329bbf23497e617b8a0f9153",
      "fileid": "https://r2.ropensci.org/366e9d3b0edb2aed7951d8a1444d45d4b0f476e4c63abac12284bc5f4af22c5b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/35498848661"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.8",
      "date": "2026-09-20T08:16:12.000Z",
      "commit": "459024b98df3f747329bbf23497e617b8a0f9153",
      "fileid": "https://r2.ropensci.org/eb511d3142ed67a13414fd63826bc60599a469b982ab58c4746180b910678e98",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/35498848661"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.8",
      "date": "2026-09-20T08:16:04.000Z",
      "commit": "459024b98df3f747329bbf23497e617b8a0f9153",
      "fileid": "https://r2.ropensci.org/6d36c349664ef87d1c856013682177fded4c56082079f767bb7f19b12f25721a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/35498848661"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.8",
      "date": "2026-09-20T08:16:42.000Z",
      "commit": "459024b98df3f747329bbf23497e617b8a0f9153",
      "fileid": "https://r2.ropensci.org/37579ddbcf2a738337da5d61b1ab03c6a061711fc492980b75237394e54587be",
      "status": "success",
      "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/35498848661"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.8",
      "date": "2026-09-20T08:15:23.000Z",
      "commit": "459024b98df3f747329bbf23497e617b8a0f9153",
      "fileid": "https://r2.ropensci.org/4ab89662496a297bafa4a61da6b84e7258183c21bb9eaa7dbe9ccbb6c5e680e3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/35498848661"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.8",
      "date": "2026-09-20T08:15:19.000Z",
      "commit": "459024b98df3f747329bbf23497e617b8a0f9153",
      "fileid": "https://r2.ropensci.org/8d31fe180402acbc838d4ddf17c06bf41d73276a0919cc35f15f40a8044b32aa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/35498848661"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.8",
      "date": "2026-09-20T08:15:27.000Z",
      "commit": "459024b98df3f747329bbf23497e617b8a0f9153",
      "fileid": "https://r2.ropensci.org/073bfb4213c8fd6cd9c8a03ed73c664e0086c00ec76ffcec38253761cb49a933",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/35498848661"
    }
  ]
}