{ "_id": "6a1170fcacfb0bcc41cf701b", "Package": "BioVizSeq", "Type": "Package", "Title": "Visualizing the Elements Within Bio-Sequences", "Version": "1.0.8", "Authors@R": "person(\"Shiqi\", \"Zhao\", , \"zhaosq89@163.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-2360-956X\"))", "Maintainer": "Shiqi Zhao ", "Description": "Visualizing the types and distribution of elements within\nbio-sequences. At the same time, We have developed a geom\nlayer, geom_rrect(), that can generate rounded rectangles. No\nexternal references are used in the development of this\npackage.", "Encoding": "UTF-8", "License": "Artistic-2.0", "Language": "en-US", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev make libicu-dev libpng-dev libuv1-dev\nlibssl-dev zlib1g-dev", "Repository": "https://zhaosq2022.r-universe.dev", "Date/Publication": "2026-04-23 15:32:04 UTC", "RemoteUrl": "https://github.com/zhaosq2022/biovizseq", "RemoteRef": "HEAD", "RemoteSha": "459024b98df3f747329bbf23497e617b8a0f9153", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-23 09:14:57 UTC", "User": "root" }, "Author": "Shiqi Zhao [aut, cre, cph] (ORCID:\n)", "MD5sum": "2e5cf664bbffa089a25a7101c3cbcc19", "_user": "zhaosq2022", "_type": "src", "_file": "BioVizSeq_1.0.8.tar.gz", "_fileid": "278cf734407002613c23c811f78f053447ad92938a9e5fe1100e88054b0ec777", "_filesize": 1933457, "_sha256": "278cf734407002613c23c811f78f053447ad92938a9e5fe1100e88054b0ec777", "_created": "2026-05-23T09:14:57.000Z", "_published": "2026-05-23T09:18:52.071Z", "_distro": "noble", "_jobs": [ { "job": 77511742915, "time": 180, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7175900215" }, { "job": 77511742910, "time": 200, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7175902015" }, { "job": 77511742892, "time": 168, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7175897251" }, { "job": 77511742877, "time": 192, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7175898835" }, { "job": 77511586951, "time": 191, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7175884137" }, { "job": 77511742907, "time": 145, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7175897138" }, { "job": 77511742952, "time": 119, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7175894798" }, { "job": 77511742939, "time": 107, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7175893847" }, { "job": 77511742929, "time": 127, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7175895693" } ], "_buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/26328951964", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/zhaosq2022/biovizseq", "_commit": { "id": "459024b98df3f747329bbf23497e617b8a0f9153", "author": "zhaosq2022 ", "committer": "zhaosq2022 ", "message": "gene information\n", "time": 1776958324 }, "_maintainer": { "name": "Shiqi Zhao", "email": "zhaosq89@163.com", "login": "zhaosq2022", "description": "", "uuid": 23204985, "orcid": "0000-0002-2360-956X" }, "_registered": true, "_dependencies": [ { "package": "dplyr", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "httr", "role": "Imports" }, { "package": "RColorBrewer", "role": "Imports" }, { "package": "seqinr", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "ggtree", "role": "Imports" }, { "package": "treeio", "role": "Imports" }, { "package": "ggh4x", "role": "Imports" }, { "package": "shiny", "role": "Imports" } ], "_owner": "zhaosq2022", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-02", "n": 1 }, { "week": "2026-05", "n": 1 }, { "week": "2026-10", "n": 1 }, { "week": "2026-17", "n": 1 } ], "_tags": [], "_stars": 1, "_userbio": { "uuid": 23204985, "type": "user", "name": "zhaosq2022" }, "_downloads": { "count": 256, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BioVizSeq" }, "_devurl": "https://github.com/zhaosq2022/biovizseq", "_searchresults": 24, "_rbuild": "4.6.0", "_assets": [ "extra/BioVizSeq.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/zhaosq2022/biovizseq", "_realowner": "zhaosq2022", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2024-11-20" }, { "version": "0.1.1", "date": "2024-11-27" }, { "version": "0.1.2", "date": "2024-12-10" }, { "version": "1.0.0", "date": "2024-12-22" }, { "version": "1.0.1", "date": "2025-01-11" }, { "version": "1.0.2", "date": "2025-03-22" }, { "version": "1.0.3", "date": "2025-04-11" }, { "version": "1.0.4", "date": "2025-08-22" }, { "version": "1.0.5", "date": "2026-01-10" } ], "_exports": [ "biovizseq", "cdd_plot", "cdd_to_loc", "combi_p", "combi_p2", "fastaleng", "geom_rrect", "gff_plot", "gff_statistics", "gff_to_loc", "meme_plot", "meme_seq", "meme_to_loc", "motif_plot", "pfam_plot", "pfam_to_loc", "plantcare_classify", "plantcare_plot", "plantcare_plot1", "plantcare_plot2", "plantcare_plot3", "plantcare_statistic1", "plantcare_statistic2", "plantcare_to_loc", "ProtParam_calc", "smart_plot", "smart_to_loc", "upload_fa_to_plantcare" ], "_help": [ { "page": "biovizseq", "title": "BioVizSeq shiny app start function.", "topics": [ "biovizseq" ] }, { "page": "cdd_plot", "title": "cdd_plot", "topics": [ "cdd_plot" ] }, { "page": "cdd_to_loc", "title": "cdd_to_loc", "topics": [ "cdd_to_loc" ] }, { "page": "combi_p", "title": "combi_p", "topics": [ "combi_p" ] }, { "page": "combi_p2", "title": "combi_p2", "topics": [ "combi_p2" ] }, { "page": "fastaleng", "title": "fastaleng", "topics": [ "fastaleng" ] }, { "page": "geom_rrect", "title": "geom_rrect", "topics": [ "geom_rrect" ] }, { "page": "gff_plot", "title": "gff_plot", "topics": [ "gff_plot" ] }, { "page": "gff_statistics", "title": "gff_statistics", "topics": [ "gff_statistics" ] }, { "page": "gff_to_loc", "title": "gff_to_loc", "topics": [ "gff_to_loc" ] }, { "page": "meme_plot", "title": "meme_plot", "topics": [ "meme_plot" ] }, { "page": "meme_seq", "title": "meme_seq", "topics": [ "meme_seq" ] }, { "page": "meme_to_loc", "title": "meme_to_loc", "topics": [ "meme_to_loc" ] }, { "page": "motif_plot", "title": "motif_plot", "topics": [ "motif_plot" ] }, { "page": "pfam_plot", "title": "pfam_plot", "topics": [ "pfam_plot" ] }, { "page": "pfam_to_loc", "title": "pfam_to_loc", "topics": [ "pfam_to_loc" ] }, { "page": "plantcare_classify", "title": "plantcare_classify", "topics": [ "plantcare_classify" ] }, { "page": "plantcare_plot", "title": "plantcare_plot", "topics": [ "plantcare_plot" ] }, { "page": "plantcare_plot1", "title": "plantcare_plot1", "topics": [ "plantcare_plot1" ] }, { "page": "plantcare_plot2", "title": "plantcare_plot2", "topics": [ "plantcare_plot2" ] }, { "page": "plantcare_plot3", "title": "plantcare_plot3", "topics": [ "plantcare_plot3" ] }, { "page": "plantcare_statistic1", "title": "plantcare_statistic1", "topics": [ "plantcare_statistic1" ] }, { "page": "plantcare_statistic2", "title": "plantcare_statistic2", "topics": [ "plantcare_statistic2" ] }, { "page": "plantcare_to_loc", "title": "plantcare_to_loc", "topics": [ "plantcare_to_loc" ] }, { "page": "ProtParam_calc", "title": "ProtParam_calc", "topics": [ "ProtParam_calc" ] }, { "page": "smart_plot", "title": "smart_plot", "topics": [ "smart_plot" ] }, { "page": "smart_to_loc", "title": "smart_to_loc", "topics": [ "smart_to_loc" ] }, { "page": "upload_fa_to_plantcare", "title": "upload_fa_to_plantcare", "topics": [ "upload_fa_to_plantcare" ] } ], "_readme": "https://github.com/zhaosq2022/biovizseq/raw/HEAD/README.md", "_rundeps": [ "ade4", "ape", "aplot", "askpass", "base64enc", "bslib", "cachem", "cli", "commonmark", "cpp11", "curl", "digest", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "fontBitstreamVera", "fontLiberation", "fontquiver", "fs", "gdtools", "generics", "ggfun", "ggh4x", "ggiraph", "ggplot2", "ggplotify", "ggtree", "glue", "gridGraphics", "gtable", "highr", "htmltools", "htmlwidgets", "httpuv", "httr", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magrittr", "MASS", "memoise", "mime", "nlme", "openssl", "otel", "patchwork", "pillar", "pixmap", "pkgconfig", "promises", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "RcppArmadillo", "rlang", "rmarkdown", "S7", "sass", "scales", "segmented", "seqinr", "shiny", "sourcetools", "sp", "stringi", "stringr", "sys", "systemfonts", "tibble", "tidyr", "tidyselect", "tidytree", "tinytex", "treeio", "utf8", "vctrs", "viridisLite", "withr", "xfun", "xtable", "yaml", "yulab.utils" ], "_score": 3.681241237375587, "_indexed": true, "_nocasepkg": "biovizseq", "_universes": [ "zhaosq2022" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.8", "date": "2026-05-23T09:17:35.000Z", "distro": "noble", "commit": "459024b98df3f747329bbf23497e617b8a0f9153", "fileid": "56fc42f4a31acc776756bc0926b9bbaab37d63f12439680b79302a6a60332d5f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/26328951964" }, { "r": "4.6.0", "os": "linux", "version": "1.0.8", "date": "2026-05-23T09:17:52.000Z", "distro": "noble", "commit": "459024b98df3f747329bbf23497e617b8a0f9153", "fileid": "15d412d241861bbf0acc87eece78dee042baf75fc52b41a21e852c6d4e326cbc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/26328951964" }, { "r": "4.5.3", "os": "mac", "version": "1.0.8", "date": "2026-05-23T09:17:16.000Z", "commit": "459024b98df3f747329bbf23497e617b8a0f9153", "fileid": "4e0b1e9743c610cfcd7776968286fab7c573c25c5288d471de1b42dda832c5f6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/26328951964" }, { "r": "4.6.0", "os": "mac", "version": "1.0.8", "date": "2026-05-23T09:17:19.000Z", "commit": "459024b98df3f747329bbf23497e617b8a0f9153", "fileid": "ea0ae85d46d164d211d66368e111f6d8622fb028748a34ba4f5c0e883a5b9f01", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/26328951964" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.8", "date": "2026-05-23T09:17:40.000Z", "commit": "459024b98df3f747329bbf23497e617b8a0f9153", "fileid": "499ac4cd4a33ecb5275ead11f2ff6b11e06cf8dd611b711063fdc5d5d6df8c9e", "status": "success", "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/26328951964" }, { "r": "4.7.0", "os": "win", "version": "1.0.8", "date": "2026-05-23T09:16:31.000Z", "commit": "459024b98df3f747329bbf23497e617b8a0f9153", "fileid": "a04b58188f31cf288af376608620057cf66cb1bcf7327a44a1ce805a8621662d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/26328951964" }, { "r": "4.5.3", "os": "win", "version": "1.0.8", "date": "2026-05-23T09:16:13.000Z", "commit": "459024b98df3f747329bbf23497e617b8a0f9153", "fileid": "5695bc3eb4fc3d72cb2d30e630b9eaf0c4bd0ab2a4fbcbbaf653b4b2914450b0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/26328951964" }, { "r": "4.6.0", "os": "win", "version": "1.0.8", "date": "2026-05-23T09:16:20.000Z", "commit": "459024b98df3f747329bbf23497e617b8a0f9153", "fileid": "0055619f7c5385dc432a90a735ab120865766c8731909e75a068d58453efd10a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/zhaosq2022/actions/runs/26328951964" } ] }